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PlantCARE, a database of plant promoters and their cis

PlantCARE, a database of plant promoters and their cis

PlantCARE, a database of plant promoters and their cis ...

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane Rombauts. Nucleic Acids Res. 2002 Jan 1;30 (1):325-327.

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PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when availa

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(PDF) PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. ... These are a new quality-based this genome was finding the genes and their structure, leading to clustering method (5) and a motif search algorithm called Motif an estimated number of more than 25 500 genes (1 ...

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PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are

get price

PlantCARE, a plant cis-acting regulatory element database

PlantCARE is a database of plant cis- acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional.

get price

PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are

get price

(PDF) PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. ... These are a new quality-based this genome was finding the genes and their structure, leading to clustering method (5) and a motif search algorithm called Motif an estimated number of more than 25 500 genes (1 ...

get price

PlantCARE, a database of plant cis-acting regulatory ...

Jan 01, 2002  PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available.

get price

PlantCARE -- A database of plant cis-acting elements HSLS

Apr 24, 2006  Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are also given. As of 2003, there were a total of 668 cis-acting regulatory elements that can be queried on TF-site name, motif, function, species, cell type, gene ...

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PlantCARE, a plant cis-acting regulatory element database

established plant cis-acting regulatory elements. This under-representation of plant data makes these systems not efficiently applicable to plant promoter sequences. We thus began to collect as much information as possible about plant promoters with their cis-acting regulatory elements and to organize them in a local relational database.

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Genomic Analysis of MicroRNA Promoters and Their Cis ...

Nov 01, 2010  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325-327. Liu H H, Tian X, Li Y J, Wu C A, Zheng C C. 2008.

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New PLACE - dna.affrc.go.jp

New PLACE. PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants only, but we changed the policy in April 2006 (See the release note of PLACE 26.0). In addition to the reported motifs in the original publication, their ...

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PlantPAN - Database Commons

Therefore, a tool for detecting the co-regulation of transcription factors in a group of gene promoters is required. This study develops a database-assisted system, PlantPAN (Plant Promoter Analysis Navigator), for recognizing combinatorial cis-regulatory elements with a distance constraint in sets of plant

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PlantCARE, a plant cis-acting regulatory element database ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional.

get price

Plant Promoter Analysis Tool - Best Coupon Codes

PlantCARE, a database of plant promoters and their cis . CODES (9 days ago) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane Rombauts.

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Plant Promoters: An Approach of Structure and Function ...

Oct 12, 2013  According to the PlantCARE database, other cis-elements are present in promoters but are not common, as mentioned above. Representative examples include the L and I boxes, which have TCTCACCAACC and CTCTTATGCT as their consensus sequences at +58 to +68 bp and +95 to +103 bp from the TSS positions, respectively; ARE, an essential element for the ...

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Plant Promoter Database Verified GetCouponsWorld

PlantCARE, a database of plant promoters and their cis ... COUPON (6 days ago) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane Rombauts Nucleic ...

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ppdb: a plant promoter database

A promoter database can be generated from a combina-tion of genome sequence, information of promoter positions and a list of cis-regulatory elements. Currently a major restriction on the quality of a promoter database is our limited knowledge of cis-elements. There are several established genome-wide plant promoter databases avail-

get price

PlantCARE, a plant cis-acting regulatory element database

established plant cis-acting regulatory elements. This under-representation of plant data makes these systems not efficiently applicable to plant promoter sequences. We thus began to collect as much information as possible about plant promoters with their cis-acting regulatory elements and to organize them in a local relational database.

get price

[PDF] PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature,

get price

PlantCARE, a database of plant cis-acting regulatory ...

Jan 01, 2002  PlantCARE is a database of plant cis -acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are ...

get price

PlantCARE - Database Commons

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available.

get price

PlantCARE, a plant cis-acting regulatory element database ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional.

get price

ppdb: a plant promoter database

A promoter database can be generated from a combina-tion of genome sequence, information of promoter positions and a list of cis-regulatory elements. Currently a major restriction on the quality of a promoter database is our limited knowledge of cis-elements. There are several established genome-wide plant promoter databases avail-

get price

Plant Promoters: An Approach of Structure and Function ...

Oct 12, 2013  According to the PlantCARE database, other cis-elements are present in promoters but are not common, as mentioned above. Representative examples include the L and I boxes, which have TCTCACCAACC and CTCTTATGCT as their consensus sequences at +58 to +68 bp and +95 to +103 bp from the TSS positions, respectively; ARE, an essential element for the ...

get price

PlantProm - Plant Promoter Database

PlantProm DB was initially developed as an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species. The first release of DB, 2002.01, developed by the Department of Computer Science at Royal Holloway, University of London, in collaboration with Softberry Inc. (USA), is ...

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Genomic identification of microRNA promoters and their cis ...

Dec 17, 2015  Lescot M, Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouze P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325–327

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PlantProm - Plant Promoter Database - Softberry

PlantProm DB was initially developed as an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species. The first release of DB, 2002.01, developed by the Department of Computer Science at Royal Holloway, University of London, in collaboration with Softberry Inc. (USA), is ...

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Plant Promoter Database Verified GetCouponsWorld

PlantCARE, a database of plant promoters and their cis ... COUPON (6 days ago) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane Rombauts Nucleic ...

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Genome-wide comparative analysis of putative bidirectional ...

Jan 15, 2009  GC content of these promoters was analyzed and compared to a set of random promoter sequences of 250 bp from the transcriptional start site. Significantly higher GC content of 55%, 37%, and 48% was observed in rice, Arabidopsis, and Populus bidirectional promoters, compared to 47%, 33%, and 38% of rice, Arabidopsis, and Populus random promoter sets, respectively ().

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Biologically Significant Cis-Regulatory Elements and ...

Oct 23, 2019  PLACE and PlantCARE are public depositories of plant CREs, while PlantTFDB 4.0 is a comprehensive database for plant TFs, and information on the TF binding motifs (TFBMs) was derived from experiments, regulatory elements, and regulatory interactions. Meanwhile, PlantCARE and BAR [13] also provide tools for the in silico analysis of promoter ...

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In silico comparative analysis of promoters derived from ...

Nov 28, 2017  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 2002; 30 (1):325–327. doi: 10.1093/nar/30.1.325.

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